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Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST003574
species: Zea mays
miRNA family: miR166d
source: miRNEST

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGAATGTTGTCTGGTTCAAGG

miRNA*
 TCGGACCAGGTTTCTTCCCC

mismatches: 5
bulges: 1
View larger
pre-miRNA
 TGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTTTTGCTTTGTGATCCATCTGTGTAGAGCTTCTTAGTATCCTTGGATCTGCAGATCTCGGACCAGG
TTTCTTCCCCTCCAAAAT

dot-bracket secondary structure
.......(((.((((.....((((((((.(((((...(((.....((((((.......(((...))).........)))))).)))))))).))))))))
....)))).)))......


SIMILARITIES
miRBase zma-MIR166d: 8e-36

PMRD zma-miR166d: 8e-36

microPC miR166: 0.0000004		UniProt no hits

RFAM mir-166: 4e-38		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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