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Species belonging to selected taxon:

Acyrthosiphon pisum, Aphis gossypii, Myzus persicae



ABOUT THIS RECORD

ID: MNEST035136
species: Acyrthosiphon pisum
miRNA family: mir-3036
source: miRBase, original name: api-mir-3036-5 (MI0013986)

Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATTGGTTTCTAGATCTCAGCA

miRNA*
CTGGGATTTAGAAAGCAATAT

mismatches: 1
bulges: 0

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pre-miRNA
ATTGGTTTCTAGATCTCAGCATTTAAATTGATTGTTGCTGGGATTTAGAAAGCAATAT

dot-bracket secondary structure
((((.((((((((((((((((..............)))))))))))))))).))))..


SIMILARITIES
miRBase api-mir-3036-4: 3e-27

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: api-mir-3036-4 from miRBase (MNEST035135)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence

references

[1] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"




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