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Species belonging to selected taxon:

Aphis gossypii, Aphis gossypii



ABOUT THIS RECORD

ID: MNEST008893
species: Aphis gossypii
miRNA family: mir-10
source: miRNEST

Taxonomy by NCBI:
Aphis gossypii Aphis Aphis Aphidini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAAATTCGGTTCTAGAGAGGT

miRNA*
CCTGTAGATCCGAATTTGTT

mismatches: 2
bulges: 1

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pre-miRNA
GTAGTGATGCTCTACATCTACCCTGTAGATCCGAATTTGTTTGAAAAACGGCGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTGCATATTCC

dot-bracket secondary structure
......((((.((((((..(((((.((((.(((((((((((...........))))))))))).)))).)).)))..)))))).)))).....


SIMILARITIES
miRBase api-mir-10: 7e-42

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-10: 3e-26
most similar mature miRNAs

Identical with: api-mir-10 from miRBase (MNEST035050)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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