ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf501
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAATAAAGCCATGGATGGATC miRNA* TCCGTATGTGGCTTTACTTCT mismatches: 2 bulges: 0 |
pre-miRNA
TTGGTTTTCTTTCTTGATCGGGAATAAAGCCATGGATGGATCTGATTCGGGTTTGGCTTCTGGTTCCGGATCCGTATGTGGCTTTACTTCTGTTGAGATT
ATTGTTGTG
dot-bracket secondary structure
...........((((((.(((((.((((((((((.(((((((((..(((((.......)))))...))))))))).)))))))))).)))))))))))..
.........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGGTTTTCTTTCTTGATCGGGAATAAAGCCATGGATGGATCTGATTCGGGTTTGGCTTCTGGTTCCGGATCCGTATGTGGCTTTACTTCTGTTGAGATT
ATTGTTGTG
dot-bracket secondary structure
...........((((((.(((((.((((((((((.(((((((((..(((((.......)))))...))))))))).)))))))))).)))))))))))..
.........
SIMILARITIES| miRBase no hits PMRD ath-miRf11088-akr: 3e-44 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ath-miRf11088-akr from PMRD (MNEST048188) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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