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Species belonging to selected taxon:

Ixodes scapularis, Tetranychus urticae, Rhipicephalus microplus, Rhipicephalus appendiculatus



ABOUT THIS RECORD

ID: MNEST034972
species: Ixodes scapularis
miRNA family: mir-133
source: miRBase, original name: isc-mir-133 (MI0012266)

Taxonomy by NCBI:
Ixodes scapularis Ixodes Ixodinae Ixodidae Ixodoidea Ixodida Parasitiformes Acari Arachnida Chelicerata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGTCCCCTTCAACCAGCTGT

miRNA*
AGCTGGCTGAAGCCGGGCCAAAT

mismatches: 3
bulges: 1

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pre-miRNA
TTAGCTGGCTGAAGCCGGGCCAAATCGTCATAATTCCTATGAAAAGGAATCTCAATACATTTGGTCCCCTTCAACCAGCTGTGGTTGGCATAGCTCAACA
A


dot-bracket secondary structure
.(((((((.(((((..(((((((((.((....((((((......))))))......))))))))))).))))).)))))))..((((((...)).)))).
.



SIMILARITIES
miRBase dpu-mir-133: 0.0000000003

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-133: 6e-46

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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