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Species belonging to selected taxon:

Gallus gallus, Taeniopygia guttata, Meleagris gallopavo, Lonchura striata domestica



ABOUT THIS RECORD

ID: MNEST025921
species: Gallus gallus
miRNA family: mir-30
source: miRBase, original name: gga-mir-30e (MI0001256)

Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTAAACATCCTTGACTGG

miRNA*
AGTCGGATGTTTACAGC

mismatches: 0
bulges: 2

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pre-miRNA
CGGGGCAGTCATCGCTGCTGTAAACATCCTTGACTGGAAGCTGTGAGGTGTCAGCGGGGGCTTTCAGTCGGATGTTTACAGCTGCAGGCTGCTGCA

dot-bracket secondary structure
.(.(((((((...((.(((((((((((((..(((((((((((.(...((....)).).)))))))))))))))))))))))).)).))))))).).


SIMILARITIES
miRBase mml-mir-30e: 9e-23

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-30: 4e-28

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Xu H, Wang X, Du Z, Li N, FEBS Lett. 580:3610-3616(2006)., "Identification of microRNAs from different tissues of chicken embryo and adult chicken"
[2] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[3] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"




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