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Species belonging to selected taxon:

Ciona intestinalis, Molgula tectiformis, Ciona savignyi, Halocynthia roretzi



ABOUT THIS RECORD

ID: MNEST025319
species: Ciona savignyi
miRNA family: mir-31
source: miRBase, original name: csa-mir-31 (MI0007187)

Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGCAAGATGTTGGCATAGCT

miRNA*
TGTGCTAATGTCTAGCCTTG

mismatches: 2
bulges: 1

View larger
pre-miRNA
ATGTGACTAGCACTATGGCAAGATGTTGGCATAGCTATAAAAATGTTAAACATAGTGTGCTAATGTCTAGCCTTGGCGCTAG

dot-bracket secondary structure
......(((((.(((.(((.(((((((((((((.((((.............))))))))))))))))).))).))).)))))


SIMILARITIES
miRBase cin-mir-31: 0.00000006

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-31: 7e-39

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"




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