miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ciona intestinalis, Molgula tectiformis, Ciona savignyi, Halocynthia roretzi



ABOUT THIS RECORD

ID: MNEST025330
species: Ciona savignyi
source: miRBase, original name: csa-mir-155 (MI0007198)

Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTAATGCTAATAAGTGATTTATG

miRNA*
ACGTGTCACATAATTAACAGCAATTACGG

mismatches: 7
bulges: 5

View larger
pre-miRNA
TAGCTAATTGTACTACTCTTACTGACGTGTCACATAATTAACAGCAATTACGGGACGGATCACTGAGCTGTAGTGATACAGAAAGTCAGCGCATCTGTAA
TTAATGCTAATAAGTGATTTATG
GTTTCGTTCTACAAA


dot-bracket secondary structure
.......(((((..((....(((.....(((((....(((..((((.(((....(((((((.((((.(((((....)))))....)))).).))))))..
.)))))))..))))))))....)
))...))..))))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"




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