miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST003022
species: Artemisia annua
miRNA family: MIRf469
source: miRNEST

Taxonomy by NCBI:
Artemisia annua Artemisia Artemisiinae Anthemideae Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTGCAATCCCAGCACTTTGG

miRNA*
 AAGTGCTGGGATTACAGGCA

mismatches: 1
bulges: 1
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pre-miRNA
 TTTTTGTTTTTTTGTACAGATGAGGTCTCACTATGTGGCCCAGGCTGGTGTTGAAATCCTGGGCTCAAGAAATCCTCCCACCTCAGCCTCCCAAGTGCTG
GGATTACAGGCATGAGCCCCCATGCCCAGCCTCTGAATCATTTTCTTTAGGTTAGCAAACTATTCGGCCAGATCTTTTAAATACATGAATGCTTTATTGC
TTTGTTTTCCTTTAACTCATTCTGTTCTCCACACTCATTTAAGGAGACAAGTCTGTTCATTTCTCCACCAGATACATTTTACTGTAGGATTTGGGAGTGA
CAAAGCCGCGAGTCATTTAAACAGCGGGGTTGCATGGCTCAGAAGAGTTGACTACTCACATAAGTCAGTGTATTGGCGGAGGAGGAAAAATACTCCTTTA
AATACGAGTAATAAAACAATATTAAAAGTAGACCAGGCTGGACGCAGTGGCTCATGTCTGCAATCCCAGCACTTTGGGAGGCTGAGATGGGTAGATCACA
AGGTCAGGAGTTTGAGACTAGCCTGACCAACATGGTGAAACCCCACGTCTACTAAAAATACAAAAA

dot-bracket secondary structure
.((((((.((((((...(((((.(((.(((((((((((..(((((((((.(((((.((((((.((...((..((..((((.(((((((((((((((((((
(((((.((((((((((((....(((((((((...(((.....)))....((((.((..(((.((((((((((((((.....((.((((.(((......((
((((((.((((..((.((....(((.((((............))))))).(((((.............)))))(((......))).)).)).))))..))
)))))).)))..)))).))......))))))...)))))..))).)))(((((.........))))).((((((...(((((((........))))))).
))))))..(((((......)))))...)).)))).))))))..)))..)))))))))))).))))))))))).))))))))))))).))))..))))...
)).)))))).))))).))))))))).)).))))))))).)))...)))))..)))))).)))))).


SIMILARITIES
miRBase hsa-mir-5096: 2e-18

PMRD ptc-miRf12412-akr: 0.000002

microPC no hits		UniProt sp|Q96N38|ZN714_HUMAN: 0.000001

RFAM Metazoa_SRP: 5e-29		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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