miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000213
species: Barnadesia spinosa
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Barnadesia spinosa Barnadesia Barnadesioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTTGAATTGAAGGGAGAAATA

miRNA*
TTTTCCCCTTGAAATCCGCCC

mismatches: 4
bulges: 0

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pre-miRNA
CTCTCTCTCTACAAATCTCATATTTTCCCCTTGAAATCCGCCCCCTGTCTTGAATTTTCAACACAAACTTTTCCCTCTTTTTCATACATTTGATCGAATT
AGGGAATAAGCAACAAAAGCCCCAACAAATTCGGGTTCAATTTCGTTTTTGTTGTTTTTGAATTGAAATGCTAAAGAAATTAGGTTGAATTGAAGGGAGA
AATA
GAGATGGTGGTGAGGAAAG


dot-bracket secondary structure
.((((...((((..(((((.((((((.(((((.((.((.(((.....((((....((((((..((((...((((((..((((((......)))..)))..
))))))..(((((((((((((((.........))).........))))))))))))))))..)))))).....)))).....))).)).)).))))).))
))))
))))).)))).))))....



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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