ABOUT THIS RECORDspecies: Centaurea solstitialis
source: microPC, original name: miR1030
Taxonomy by NCBI:
Centaurea solstitialis Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTGCATTTGCACCTGCACC miRNA* TGCAGGACAAGTGCAGG mismatches: 2 bulges: 1 |
pre-miRNA
TCTGCATTTGCACCTGCACCTTTCTACCTTTCTTCTCCATCTTCATCTTCTTCACCACCATCATAAGACAATGTGTGTGTGTGTGTGTGTGTGTGAGTAG
GTGGAGAGGTTAAGAAGAAAAGAAGGGTGCAGGACAAGTGCAGG
dot-bracket secondary structure
.(((((((((..(((((((((((((...((((((((((.(((((((((..(((((((((((((((..(((.....))).)))).))).))).))))).))
)))))))))...))))))))))))))))))))).))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCTGCATTTGCACCTGCACCTTTCTACCTTTCTTCTCCATCTTCATCTTCTTCACCACCATCATAAGACAATGTGTGTGTGTGTGTGTGTGTGTGAGTAG
GTGGAGAGGTTAAGAAGAAAAGAAGGGTGCAGGACAAGTGCAGG
dot-bracket secondary structure
.(((((((((..(((((((((((((...((((((((((.(((((((((..(((((((((((((((..(((.....))).)))).))).))).))))).))
)))))))))...))))))))))))))))))))).))))))))).
SIMILARITIES| miRBase ptc-MIR530a: 0.00003 PMRD ptc-miRf11026-akr: 0.00003 microPC miR1030: 6e-34 | UniProt no hits RFAM MIR530: 0.0001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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