miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000850
species: Helianthus ciliaris
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Helianthus ciliaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCATCATCATCTTCTTCT

miRNA*
 ATGACGACGACGATGACGATG

mismatches: 5
bulges: 0
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pre-miRNA
 TTATAATAGATGACGACGACGATGACGATGAAGATGAATATGACGGAGGAGAGAATGCTGATGTTGTTGGAAAAGCGCTGCACAAGTGCGCTCAAATATC
TGCTCAACTACGGAGTGACCTCTACGGTTCATCATCATCATCATCATCATCTTCTTCTGCTCAT

dot-bracket secondary structure
......((((.((.((.((.(((((.(((((.(((((((.....(((((.(((......((((((....((...(((((.....)))))..)).))))))
..))).(((....)))..)))))...))))))).))))).))))).)).)).)).)))).....


SIMILARITIES
miRBase ath-MIR414: 0.000008

PMRD ath-miR414: 0.000008

microPC miR414: 0.000008		UniProt no hits

RFAM mir-598: 0.0006		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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