miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus

ABOUT THIS RECORD

ID: MNEST045118
species: Lactuca perennis
miRNA family: MIR398
source: microPC, original name: miR398

Taxonomy by NCBI:
Lactuca perennis Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGTGTTCTCAGGTCACCCCT

miRNA*
GAGTGACACTAAGAACACATA

mismatches: 2
bulges: 1

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pre-miRNA
AGGAGTGACACTAAGAACACATATGGTTGAATTGCTATCTCCAGTGTATATTCATATGTTGTCAGTACAAATTTTTGATGCACATACAGTTGTTTGTGAG
ACATTGTCGACCATCCATTTGTGTTCTCAGGTCACCCCT

dot-bracket secondary structure
(((.(((((.((.((((((((.((((((((..((...((((..((((((.........((((....)))).......))))))..((((....)))))))
)))...)))))))).....)))))))).))))))).)))

UniProt no hits

RFAM MIR398: 0.0005

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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