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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001307
species: Lactuca saligna
miRNA family: MIR2025
source: miRNEST

Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GTGTTCTCAGGTCGCCCCTGC

miRNA*
 AGGTGCGATATGAGAACACAT

mismatches: 3
bulges: 0
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pre-miRNA
 CAAATGGTAGAGGCATCCAACAGGTGCGATATGAGAACACATGTTAAATGTGCAACAAATCACATTCCGCCACGTGTTCTCAGGTCGCCCCTGCAGGGTT
TTTCTCTGCTCG

dot-bracket secondary structure
.....((((((((.((((..((((.(((((.(((((((((.((...((((((........))))))....)).))))))))).))))).))))..)))).
..))))))))..


SIMILARITIES
miRBase tcc-MIR398a: 0.0000003

PMRD vvi-miR398c: 0.00008

microPC miR398: 8e-36		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR398 from microPC (MNEST045163)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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