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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001345
species: Lactuca serriola
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Lactuca serriola Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCT

miRNA*
 GAGTGACACTAAGAACACATA

mismatches: 2
bulges: 1
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pre-miRNA
 ACCGAAGAACCCAACAAGGGCATAACTCCATAGGAGTGACACTAAGAACACATATGGTTGAATTGCTATCTCCACTGCATATTCATATGTTGTACAGTAC
AAATTTTCGATGCACATACAGTTGTTTGTGAGACATTGTGTGAACCATCCATTTGTGTTCTCAGGTCACCCCTTTGGAGCACCCTGTTTCCTTTCTTTCA
CGA

dot-bracket secondary structure
...((((((...((((.(((.....(((((.(((.(((((.((.((((((((.((((.((...(((..........)))..((((((((.(((....(((
((((......((......))...)))))))..))).)))))))).)).)))).)))))))).))))))).))).)))))..)))))))....))))))..
...


SIMILARITIES
miRBase vvi-MIR398a: 0.00000001

PMRD vvi-miR398a: 0.00000001

microPC miR398: 3e-77		UniProt no hits

RFAM MIR398: 0.0000002		most similar mature miRNAs

Identical with: miR398 from microPC (MNEST045602)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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