miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001885
species: Parthenium argentatum
miRNA family: miR3441.2
source: miRNEST

Taxonomy by NCBI:
Parthenium argentatum Parthenium Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAAGAAAAAGAAGTCGTTGA

miRNA*
 AACTCTCTTTTATTTCTTGTTTC

mismatches: 4
bulges: 2
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pre-miRNA
 AACAAACCTTTAATTTCATTTCCCTACTAAATAACTCTCTTTTATTTCTTGTTTCTTTTTTGCGTTGATCATATCATGTCTAACGAAGCAGTTTACCACC
ACGCCCCGAAAACCGAAGAGCCTTGCGAAACAACCACCACCACAGTGAAGGTGGAGGAGCCTGAGACCGTGGAGCATTCAGACCGTGGGTTGTTCGGTTT
CGGGAAGAAGGAGGAGGAGGAGAAGAAGTGCGAAGATGCGGTGATCTCGTCCGAATTTGAACAGAAAGTTCAGGTTTCTGAACCCGAACCGAAATCAGAG
GAGAAGAAAGAAAGCTTGCTTGATAAACTTCACCGATCTAATAGCGGCTCCAGCAGTTCTAGTGACGAGGAGTGTGAGGACGGAGAGAAGAAGAAGAAAA
AGAAGTCGTTGAAGGAAAAGATTGAAGGGCACAAAGAAAAG

dot-bracket secondary structure
......((((((((((..(((((........((((...(((((.((((((.((((((((((.((((..(((((((.((((.(((...((..(((.((.((
....(((((((.(((((.(((((.(((............((((.((..((((......))))...)).))))...........)))))))).))))))))
)))).....)).)).)))((((......(((..((((.((((((..((.(((.(((((((((.....)))))))))(((((.............))))))
)).(((.(((....))).)))))......))))))))))....))).)))).)).))).....))))..)).))))).)))).)))))))))))))))).
)))))..))))..))))))))))))))).............


SIMILARITIES
miRBase no hits

PMRD ptc-miRf12467-akr: 0.000001

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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