miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST002992
species: Artemisia annua
miRNA family: MIR1530
source: miRNEST

Taxonomy by NCBI:
Artemisia annua Artemisia Artemisiinae Anthemideae Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTTCACATAAGTTAAAATTC

miRNA*
 TTTTTATTTTAAGTGTAATTT

mismatches: 4
bulges: 0
View larger
pre-miRNA
 CATCATGCAACATTTCACATAAGTTAAAATTCTAGCAAGTTGCTTTACAACCGTTAAAAATATAAATATTAATGAAAGTGGATCAAAAGCAGTCACGAGT
AGTGATAATAATCCAAGTGAATATTGGTTAACAGATTAGGCTGGTAGTAATAGCGTTTTACTTGACTGAGTCATTGCCGATGTGTCACCCAAAGAGACTA
GTCCCCTTATTACATTTGTTGTACACGACTCCGTCGTCTAGGTAAGAAAAGGAGAAGTGGGTCAGTCAAGTGACCTATTTGTATGCATGTTTGTGTATGT
GATTTTTATTTTAAGTGTAATTTTGTAGGGT

dot-bracket secondary structure
.(((.(((((.(((.(((.((((.(((((.((..((...(((.(((((...((((((...........))))))...))))).)))..)).(((((....
.)))))..(((.((((.......)))))))(((...(((((..(((..(((((.(((..((((((((((.(((((.((......(((((...((((((.(
(((....(((.((....)).)))...))))..))).))).)))..))...))...))))).))))))))))))))))))....)))..)))))....)))
)).))))).)))).))).))).))))).)))


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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