miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST046696
species: Centaurea solstitialis
source: microPC, original name: miR159

Taxonomy by NCBI:
Centaurea solstitialis Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGATTGAAGGGAGCTCT

miRNA*
 AGCTCCTTGAAGTCCAATA

mismatches: 2
bulges: 0
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pre-miRNA
 AGAGCTCCTTGAAGTCCAATAGAGGATCTGAGTGGGAAGATAGTGCTGCTGGCTTATGGATTCCTCAAGTCCTATCTTTATGGTTTTGTATAGGCTTTGT
GGCTTGCATAACCCAGGAGCTTTATTACCTTACTTTATGATCTTTTTTTGGATTGAAGGGAGCTCT

dot-bracket secondary structure
((((((((((..(((((((.((((((((.(((((((..(((((.(((.((((.(((((.(..((.((((.((((((...........).))))).)))).
))..).))))).)))).))).)))))..)))))))...)))))))).)))))))..))))))))))


SIMILARITIES
miRBase vvi-MIR159c: 0.00000000004

PMRD vvi-miR159c: 0.00000000004

microPC miR159: 1e-78		UniProt no hits

RFAM MIR159: 0.0000000006

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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