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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000822
species: Guizotia abyssinica
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Guizotia abyssinica Guizotia Millerieae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTCTACCATTGCCTACATTAT

miRNA*
 AATGGGTGGAGGTCGAGCC

mismatches: 4
bulges: 2
View larger
pre-miRNA
 GTCTCACTCTTCTGAATCCGGAAATGGGTGGAGGTCGAGCCCCGTTAAATCGAGGTTACAGTTTGCAGAAAATTCTTCCTGACTCTATAACCAAAGTGTA
CAAAGTAACAGATTTTTGGCGCGTGAATTTTAGACTTGCAGCACTGTTCATTACGGACCTGTTATCTGCATATGCAATATATGTGATGATGAACTATTTA
ACAAATGTCTGGAATTTAAGCATTACACGGGGTGCTGCTATCATAAACATTTGGGATGGAATCACATCGGCTTTGGTCATTGTGCTTGCCTTTTTTGTTG
ATGCCTTCTTGGATGCCTTCTATATGGTTGTACTCTCTACCATTGCCTACATTATCGGATTTGGATTATTGTCC

dot-bracket secondary structure
..........(((((((((((.(((((((((.(((.(((((((((.(((((..(((((.((....(((.((....)).)))...)).)))))...((...
.......)).))))).(((.((.((((((((((((..........((((((((.(((.......)))(((((((...)))))))..))))))))......
......)))))))))))).)).))).)))))))..(((.((((((..(((((((((.((.((((((..(((...(((......))).))).....)).))
)).)).))))))))).......)))))).)))...)).))).))))))..))).))))))))))).........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|O80436|PTR29_ARATH: 0.0002

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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