miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001296
species: Lactuca perennis
miRNA family: MIR164
source: miRNEST

Taxonomy by NCBI:
Lactuca perennis Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAGAAGCAGGGTACGTGCA

miRNA*
CATGTACCCGTCTTCACCATC

mismatches: 4
bulges: 0

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pre-miRNA
AATACGAGGTTTATAAGGTAGGCGCACAAGATGGAGAAGCAGGGTACGTGCATTACTAACTCACATGGAAATTAAAACCAGCACTTGGATATTTTTTGAC
CTTATTAAAACTGCTGGGCCTTTGATAAACTGTTACTCAACATCTTTAATTTGTAATGTAAATTTGGTCTTTGGAACCCTAACCATAGCTGTGAGTTTAT
GTTTGATAAGAAAGGTAGTGTACTAGTGTGTTTAGAAGTCGAAGCCATATGCGACTAAACACACCGGGTACACACATTTGTTCTCTTTGATAAACTTGTG
CAAAGGGCGTTTGGGTGTCATAACTAAAGCATGTGTATGTACGTTCGATTTAAAAGACCTTTCGTAGTTTCATCAGAACGTGCGTACATTGAAAACACTT
TTTGTAGTGTAATTGAAGGTAAATGAAAATTTGTAACGATTGAATATCCTCTTCCAAAAGTCTCTGATCCGCCATTGAATGAGTTGGTGATTCATGTACC
CGTCTTCACCATC
TTGACCACCTAAACCTTAATGTTGAAGA


dot-bracket secondary structure
.....(((((((...((((.((....((((((((.((((..(((((((((.((((((((((((..((((.((((((.((((((.((.((((.........
..))))..)).))))))...)))))).((.((((((.....((((((((((....((((...((((((...(((.((((...((...((..(((((((((
....((.((.(((.((.(((((((.((((((((...(((((..........)))))))))))))..))))))))).))).)).))....))))))))).)
)...))......)))).)))..))))))))))(((((((((((((((((..(((..((.....))..))).))).)))))))))))))).....(((((.
.....)))))))))))))))((((....)))))))))).))((......)).))))....((..((......))..)).)))))))))))).))))))))
)..)))).)))))
))).)))))))))))))...........



SIMILARITIES
miRBase ptc-MIR164e: 0.00000000003

PMRD ptc-miRf11320-akr: 0.00000000003

microPC miR164: 0.000000008
UniProt no hits

RFAM MIR164: 0.0000000006
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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