miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST002688
species: Taraxacum kok-saghyz
miRNA family: miR166g
source: miRNEST

Taxonomy by NCBI:
Taraxacum kok-saghyz Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGAATGTTGTTTGGCTCGAGG

miRNA*
TCGGACCAGGCTTCATTCCCC

mismatches: 4
bulges: 0

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pre-miRNA
TTTCTTTTGCGGGGAATGTTGTTTGGCTCGAGGTCACTAGAGAGCTTAGATCTCTCTCTCTATCTCTATCTCTATATACATCTATACATATAGATACAGA
TATATGTATCTATCTATGATGTTATAATTATGCTCAATTGGTCAACGGATCCAACATCCATGGTCTTTGTTGATTAATGAGCTTTAGATGAATCTTGATC
GCTGGATCTGGTGTACTCGGACCAGGCTTCATTCCCCCCAATTGTT


dot-bracket secondary structure
......(((.((((((((..((((((.(((((..(((((((...((..((((........(((((.((....((((.(((((.(((...(((((((((..
....))))))))).))))))))))))..)).(((((.((((((((((((.(((.......)))..)))))))))))))))))...)))))......))))
...)).)))))))..))))).))))))..)))))))).))).....



SIMILARITIES
miRBase ptc-MIR166a: 0.0000000002

PMRD ptc-miR166a: 0.0000000002

microPC miR166: 0.0000008
UniProt no hits

RFAM mir-166: 0.000001
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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