miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST002691
species: Taraxacum kok-saghyz
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Taraxacum kok-saghyz Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCC

miRNA*
AATGTTGTCCGGCTCGATG

mismatches: 4
bulges: 0

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pre-miRNA
CTGGGAAAGCTTTGTTTGTGGGGAATGTTGTCCGGCTCGATGCCTACAAACCTTCATCATAGATACAATCATTCGTGGTATCTATATATACAATAGGTAT
GATGATGCTCTAATGTCGTCGGACCAGGCTTCATTCCCCTCAAATTTCGCTTCCATT


dot-bracket secondary structure
...((((.((...(((((.((((((((..(((.((.((((((...........(((((((((((((...........))))))))..((((.....))))
)))))...........)))))).)).)))..)))))))).)))))...))))))...



SIMILARITIES
miRBase aqc-MIR166e: 0.0000000005

PMRD aqc-miR166e: 0.0000000005

microPC miR166: 0.0000001
UniProt no hits

RFAM mir-166: 0.00000004
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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