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Species belonging to selected taxon:

Oryzias latipes, Fundulus heteroclitus, Poecilia reticulata



ABOUT THIS RECORD

ID: MNEST006657
species: Oryzias latipes
miRNA family: let-7
source: miRNEST

Taxonomy by NCBI:
Oryzias latipes Oryzias Oryziinae Adrianichthyidae Adrianichthyoidei Beloniformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTAGGTTGTATAGT

miRNA*
TATACAGNTTATTACCTTTCT

mismatches: 2
bulges: 0

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pre-miRNA
GCCTCGCAAGGTGAGGTAGTAGGTTGTATAGTTTTTGGAATAAAGCCGCTCCTGTAAAATAACTATACAGNTTATTACCTTTCTTGA

dot-bracket secondary structure
......((((..((((((((((.((((((((((...(((..........)))........)))))))))).)))))))))).)))).


SIMILARITIES
miRBase dre-let-7a-5: 0.000000004

PMRD no hits

microPC no hits
UniProt no hits

RFAM let-7: 3e-38
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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