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Species belonging to selected taxon:

Oryzias latipes, Fundulus heteroclitus, Poecilia reticulata



ABOUT THIS RECORD

ID: MNEST006691
species: Oryzias latipes
miRNA family: miR-133b
source: miRNEST

Taxonomy by NCBI:
Oryzias latipes Oryzias Oryziinae Adrianichthyidae Adrianichthyoidei Beloniformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GCTGGTCAAACGGAACCAAGT

miRNA*
TTGGTCCCCTTCAACCAGCTA

mismatches: 4
bulges: 0

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pre-miRNA
GAAGCAACTCGCCTTGCTGTGGCTGGTCAAACGGAACCAAGTCAGGTGTTTCAGAGAGGTTTGGTCCCCTTCAACCAGCTACTGCGTCGTGAATCATAT

dot-bracket secondary structure
........((((..(((.(((((((((..((.((.((((((((..............)))))))).)).))..))))))))).)))..)))).......


SIMILARITIES
miRBase dre-mir-133b: 4e-34

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-133: 3e-44
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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