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Species belonging to selected taxon:

Gallus gallus, Taeniopygia guttata, Meleagris gallopavo, Lonchura striata domestica



ABOUT THIS RECORD

ID: MNEST025956
species: Gallus gallus
miRNA family: mir-135
source: miRBase, original name: gga-mir-135a-3 (MI0001264)

Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATGGCTTTTTATTCCTATGTGA

miRNA*
ATGTAGGGCGAAAAGCCATGGG

mismatches: 1
bulges: 1

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pre-miRNA
CCCTCTGCTGTGGTCTATGGCTTTTTATTCCTATGTGATTGCTTTTCCTAACTCATGTAGGGCGAAAAGCCATGGGCTACTCAGGGGAGGGACTCC

dot-bracket secondary structure
((((((.(((((((((((((((((((..(((((((((((((.......))).)))))))))).)))))))))))))))))..)).)))))).....


SIMILARITIES
miRBase tgu-mir-135a-2: 3e-32

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-135: 9e-45

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record

references

[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"




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