ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR2019
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGGTCGGCGCTCCACGCGGC miRNA* GCTTGGGGCCAGACCCGGA mismatches: 5 bulges: 1 |
pre-miRNA
ATCATCTGGACCGGGTCGGCGCTCCACGCGGCCGTCAACTTCGGGCAGTACCCCTACTCGGGCTACCACCCCAACAAGCCCTTCGGTAAGCCCGAGGCCC
AATGCCGGTGCAGGGGAACGAGGAGTACGCGGGGCTTGGGGCCAGACCCGGAGAAGGGGC
dot-bracket secondary structure
.((.(((...(((((((...((((((.((..((((..(((((.....((.((((..(((((((((((.................))).))))))))((((
......)).)).)))).))..)))))..)))).)).))))))..)))))))))).))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATCATCTGGACCGGGTCGGCGCTCCACGCGGCCGTCAACTTCGGGCAGTACCCCTACTCGGGCTACCACCCCAACAAGCCCTTCGGTAAGCCCGAGGCCC
AATGCCGGTGCAGGGGAACGAGGAGTACGCGGGGCTTGGGGCCAGACCCGGAGAAGGGGC
dot-bracket secondary structure
.((.(((...(((((((...((((((.((..((((..(((((.....((.((((..(((((((((((.................))).))))))))((((
......)).)).)))).))..)))))..)))).)).))))))..)))))))))).))...
SIMILARITIES| miRBase no hits PMRD tae-miR2019: 0.000002 microPC no hits | UniProt sp|P29250|LOX2_ORYSJ: 0.00000001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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