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Species belonging to selected taxon:

Bombyx mori



ABOUT THIS RECORD

ID: MNEST035530
species: Bombyx mori
miRNA family: mir-33
source: miRBase, original name: bmo-mir-33 (MI0012293)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTGCATTGTAGTTGCATTGCA

miRNA*
CAATATGACTACAAGGCAAAT

mismatches: 4
bulges: 0

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pre-miRNA
TAAAGCGAGAGTGCATTGTAGTTGCATTGCACCGGTTCCATTAACGTGCAATATGACTACAAGGCAAATCCCGAATTAGT

dot-bracket secondary structure
(((..((.((.(((.((((((((..(((((((..(((.....))))))))))..)))))))).)))..)).))..)))..


SIMILARITIES
miRBase nvi-mir-33: 0.00000006

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-33: 9e-32

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLID
deep sequencing data evidence

references

[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
[2] Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J, Funct Integr Genomics. 10:405-415(2010)., "Novel microRNAs in silkworm (Bombyx mori)"




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