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Species belonging to selected taxon:

Bombyx mori, Antheraea assama, Samia cynthia ricini



ABOUT THIS RECORD

ID: MNEST035605
species: Bombyx mori
miRNA family: mir-2733
source: miRBase, original name: bmo-mir-2733j (MI0014412)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGTCATCATACTCTCAGTTGATA

miRNA*
TCACTGGGTGCATGATGATCGT

mismatches: 3
bulges: 1

View larger
pre-miRNA
CTTCTATATCTCTCTCTAATGCAGTCATCATACTCTCAGTTGATATGTGTAACATTCTATCACTGGGTGCATGATGATCGTGGTAGAGAGATCATCACAT
CACGC


dot-bracket secondary structure
..........((((((((..((.((((((((.(.((((((.((((.(((...)))..)))))))))).).)))))))).))..)))))))).........
.....



SIMILARITIES
miRBase bmo-mir-2851-1: 2e-33

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: SOLID

references

[1] Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J, Funct Integr Genomics. 10:405-415(2010)., "Novel microRNAs in silkworm (Bombyx mori)"




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