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Species belonging to selected taxon:

Bombyx mori, Antheraea assama, Samia cynthia ricini



ABOUT THIS RECORD

ID: MNEST035645
species: Bombyx mori
miRNA family: mir-2774
source: miRBase, original name: bmo-mir-2774c (MI0012450)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTCGGTGGAAGACCTTCCCTT

miRNA*
CGGACCGTCGGTCTATAGAGCA

mismatches: 7
bulges: 1

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pre-miRNA
AACAACAACATTCGGACCGTCGGTCTATAGAGCAATATCACCCGCTCGGTGGAAGACCTTCCCTTCGTCGTTATC

dot-bracket secondary structure
...(((.((....(((..(((..(((((.((((..........)))).))))).)))..)))....)).)))...


SIMILARITIES
miRBase bmo-mir-2774a-2: 1e-21

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-2774: 8e-26

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"




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