ABOUT THIS RECORDspecies: Bombyx mori
miRNA family: mir-2778
source: miRBase, original name: bmo-mir-2778d (MI0012349)
Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTTTTTTTGCATATCCTGCA miRNA* CAGAGTACGCAAAAAACAAT mismatches: 6 bulges: 0 |
pre-miRNA
CACGGCAAAAGTTTTTTTGCATATCCTGCACAGTTTCAGTTCTCGCAGAGTACGCAAAAAACAATTTTGACGTGAG
dot-bracket secondary structure
((((.(((((..((((((((.((..((((..((........)).))))..)).))))))))...))))).))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLID
references
[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
[2] Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J, Funct Integr Genomics. 10:405-415(2010)., "Novel microRNAs in silkworm (Bombyx mori)"
CACGGCAAAAGTTTTTTTGCATATCCTGCACAGTTTCAGTTCTCGCAGAGTACGCAAAAAACAATTTTGACGTGAG
dot-bracket secondary structure
((((.(((((..((((((((.((..((((..((........)).))))..)).))))))))...))))).))))..
SIMILARITIES| miRBase bmo-mir-2778a-1: 7e-23 PMRD no hits microPC no hits | UniProt no hits RFAM mir-2778: 1e-21 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, SOLID
references
[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
[2] Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J, Funct Integr Genomics. 10:405-415(2010)., "Novel microRNAs in silkworm (Bombyx mori)"
