miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brachypodium distachyon



ABOUT THIS RECORD

ID: MNEST003045
species: Brachypodium distachyon
miRNA family: MIR2504
source: miRNEST

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGACCACGTTTATAGAAAAT

miRNA*
TTTCTATAAATTCGGTCAATA

mismatches: 3
bulges: 0

View larger
pre-miRNA
CACTGACTTCTAGGTTTGACCTAAGTCAAACGTTTTAAATTTTGACCACGTTTATAGAAAATGTATTAATATTAATATGTACTTCCTCCGTACTATAATT
CTTGTCTAAAATTTGCCCAAATATGGATATATCTATTCCTAAAAAGCGTCTAGGTACATGTAATATTTCGACAAGAATTATGAAACGGAGGGAATATATT
AATAAGTATGCTATGAAAATATATATGCCATGCTTGTTTTGATAAAACTAATTTGAAGTTGTAAATGTTAGTAAACTTTTCTATAAATTCGGTCAATATT
TGAAGAGTTTGACACAGGACAGACCTAGAACATCTT


dot-bracket secondary structure
.......(((((((((((.(((..(((((((.((((((((.((((((..((((((((((((..(((((((.(((((((((..(((((((((..(((((((
((((((.(((..((((.......(((((...................))))).......))))..))).)))))))))))))..))))))))))))))))
))((((((((.((((........)))).)))))))).((((....((((.......)))).)))).)))))))...))))))))))))..)))))).)))
))))).)))))))..))).)))))))))))......



SIMILARITIES
miRBase bdi-MIR1135: 0.000000000000005

PMRD bdi-miR1135: 0.000000000000005

microPC no hits
UniProt no hits

RFAM MIR1122: 2e-33
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;