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Species belonging to selected taxon:
Daphnia pulex
,
Artemia franciscana
,
Daphnia magna
ABOUT THIS RECORD
ID:
MNEST035003
species:
Daphnia pulex
miRNA family:
mir-31
source:
miRBase, original name:
dpu-mir-31
(
MI0012240
)
Taxonomy by NCBI:
Daphnia pulex
Daphnia
Daphniidae
Anomopoda
Cladocera
Diplostraca
Phyllopoda
Branchiopoda
Crustacea
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGGCAAGATGTCGGCATAGCTGA
miRNA*
AGCTGTGTTACATCGTGCCAAC
mismatches:
3
bulges:
1
View larger
pre-miRNA
GAATGGAGGGTTTCGCGCGA
AGGCAAGATGTCGGCATAGCTGA
CGTGCTAATCCGAGTGT
AGCTGTGTTACATCGTGCCAAC
GTGAACCGCTCCCAATGA
C
dot-bracket secondary structure
....((((((((...((((.
.((((.(((((.((((((((((.
...(((......))).)
)))))))))))))).))))..)
))))))).))))......
.
SIMILARITIES
miRBase
ame-mir-31a
:
0.00000008
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-31: 0.000001
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"