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Species belonging to selected taxon:

Daphnia pulex, Artemia franciscana, Daphnia magna



ABOUT THIS RECORD

ID: MNEST035027
species: Daphnia pulex
miRNA family: mir-216
source: miRBase, original name: dpu-mir-283 (MI0012225)

Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAATATCAGCAGGTAATTCT

miRNA*
ACTGCCGGCTGGTATCAGG

mismatches: 4
bulges: 1

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pre-miRNA
CTGCTGATGGCTTCTGATACGGCCAAATATCAGCAGGTAATTCTGGGCAGTTATTATCCTTGGACTTGATTAAAATACAAGGAAGAACCCAGACTGCCGG
CTGGTATCAGG
CCGTG


dot-bracket secondary structure
..((.....))......(((((((..((((((((.((((..((((((...((....((((((...............)))))).)).)))))).)))).)
)))))))..))
)))))



SIMILARITIES
miRBase ame-mir-283: 0.0003

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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