miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Daphnia pulex, Artemia franciscana, Daphnia magna



ABOUT THIS RECORD

ID: MNEST035035
species: Daphnia pulex
miRNA family: mir-965
source: miRBase, original name: dpu-mir-965 (MI0012255)

Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAAGCGTATGGCTTTTCCCCTG

miRNA*
AGGGAAAGGTTGTAGCTCTTATG

mismatches: 4
bulges: 1

View larger
pre-miRNA
AAGTGTGCAAAGCAAGGGAAAGGTTGTAGCTCTTATGTCTCATTTTGATTAGCATAAGCGTATGGCTTTTCCCCTGCAGTGTCACTTGATG

dot-bracket secondary structure
(((((.(((..(((.(((((((((..((.(.(((((((.((.....))...))))))).)))..))))))))).)))..))))))))....


SIMILARITIES
miRBase smr-mir-965: 0.000004

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




Liczniki na strone;