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Species belonging to selected taxon:

Branchiostoma floridae



ABOUT THIS RECORD

ID: MNEST024673
species: Branchiostoma floridae
miRNA family: mir-124
source: miRBase, original name: bfl-mir-124 (MI0010026)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAAGGCACGCGGTGAATGCCAA

miRNA*
AGTGTTCACGGCGGTCCTTAAT

mismatches: 4
bulges: 0

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pre-miRNA
CGGCAAATCTCGGCTTGGCTCTTAGTGTTCACGGCGGTCCTTAATTTAACATTGTGCAATTAAGGCACGCGGTGAATGCCAAGAACAGGGCCAAATCCTC
A


dot-bracket secondary structure
...........((((..(.((((.((((((((.(((..((((((((..((...))..))))))))..))).)))))))).)))).)..))))........
.



SIMILARITIES
miRBase sko-mir-124: 0.00000000002

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-124: 8e-39

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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