miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Branchiostoma floridae
ABOUT THIS RECORD
ID:
MNEST024692
species:
Branchiostoma floridae
miRNA family:
mir-8
source:
miRBase, original name:
bfl-mir-200a
(
MI0010035
)
Taxonomy by NCBI:
Branchiostoma floridae
Branchiostoma
Branchiostomidae
Cephalochordata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAATACTGCCTGGTAATGATGC
miRNA*
ATCTTACTTGGCAGCATTCGA
mismatches:
4
bulges:
1
View larger
pre-miRNA
GACATGTTAGCTTGATTCCTGAC
ATCTTACTTGGCAGCATTCGA
TGTGTTTCCATATTC
AAATACTGCCTGGTAATGATGC
CAGTCAAGTTTCCTCACAG
T
dot-bracket secondary structure
.....(..(((((((...(((.(
((((((((.(((((.(((.((
((((....)))))).
.))).))))).))))).)))).
))))))))))..)......
.
SIMILARITIES
miRBase
pma-mir-200b
:
0.00008
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-8: 2e-36
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"