miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Branchiostoma floridae



ABOUT THIS RECORD

ID: MNEST024670
species: Branchiostoma floridae
miRNA family: mir-25
source: miRBase, original name: bfl-mir-92c (MI0010524)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATTGCACTTGTCCCGGCTTGC

miRNA*
AGGTCGGGAGAAGAAACAATGTT

mismatches: 4
bulges: 1

View larger
pre-miRNA
TAGAGGGCAGGGAGGGAATTTTGAAGTGATTGTGTTTGTAAAATTTAGCGGTTTTGTTTTTGGCGGGAAGGTCGGGAGAAGAAACAATGTTTCCAACCGA
TATTGCACTTGTCCCGGCTTGC
CTGCTGCCGCCATCTTGCTCCAGACATGACTTTGTCACTTCTTTATTTTAAGCCACCCGTTCTGCAGTGTTTCTTCTC


dot-bracket secondary structure
...(((((.(((.((((((...((((((((((((((((.........(((((.........((((((.(((((((((.(((...(((((((.......))
)))))..))).))))))))).)
))))))))))..........)))))))).....))))))))...))))....)).))))))))...............



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"




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