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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST046095
species:
Brassica napus
miRNA family:
MIR319
source:
microPC, original name:
miR319
Taxonomy by NCBI:
Brassica napus
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGACTGAAGGGAGCTCCCT
miRNA*
GGAGCTTTCTTCGGTCCACTC
mismatches:
3
bulges:
0
View larger
pre-miRNA
AG
GGAGCTTTCTTCGGTCCACTC
ATAGAATAATATGTGAGATTTAATTGACTCTCGACTCATTCATCCAAATACCAAATGAAAGAATATGTAGACATATG
GTAAATGAATGAATGATGCTAGAGACAAATTGAATCTTCACTTCTCTATGC
TTGGACTGAAGGGAGCTCCCT
dot-bracket secondary structure
((
((((((..((((((((((..(
(((((.......(((((((((((((..((((.(..((((((((.((..(((((.(((..............))).))
)))..)).))))))))..).))))...))))))))).))))...)))))).
.))))))))))..))))))))
SIMILARITIES
miRBase
ath-MIR319b
:
8e-74
PMRD
ath-miR319b
:
8e-74
microPC
miR319
:
2e-93
UniProt
no hits
RFAM
MIR159: 1e-72
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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