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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST008646
species:
Brassica oleracea
miRNA family:
MIR1885
source:
miRNEST
Taxonomy by NCBI:
Brassica oleracea
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CATCAATGAAAGGTATGATTCC
miRNA*
AATCACACTTTCATTGATAAT
mismatches:
3
bulges:
1
View larger
pre-miRNA
NAAAATCTTCTTCTGTATTTTCTTCTNNNGACTTCCTTCTTCTTTGTCNNNAACTGTCTCCATCCTGTCTTCACGAGCTTCCTCTAGAAGATGTGCGCAG
AGTCTTTCTAAGTCACACTCATAAAGAGTTCAAAGAAAAGG
AATCACACTTTCATTGATAAT
GAAATCAATAGAGAATGCTACTGAGCTCCTACAGGCGA
TTAGAAAATCTAATATGGCGATAGTCTTGCTCTCTATGAAGTGTCTATGAGAACAAGATTATCGCGATCTTAGATCCTCTAATTGCTTGTAAGAGCTGAT
CACCAATGGATCATTCGCTATTGATCTCTT
CATCAATGAAAGGTATGATTCC
CTTTCTTTGAAATTCCTTTTGAATGTGACTGAGAAAGCTTCTATGTAC
ATCTTCTCCGCGGAAGCTCATGAAAACAAGGTAGAACCAATTGTGGACAAAGAAGGAAGACATGAAAAAGATAGAGAAGAAGATCAACTT
dot-bracket secondary structure
....((((((((((.((((((.(((......((((((((((...((((...((.((..((.(((.(((.((((.((((((((...((((((((((((.((
((.((((((.(((((((.(((.((.(((((((((((((.((
(((((..(((((((((((...
((.((((((((.((((((((.(((((((.(((((((((
(((((..((((((.((.((((((((((((.((((...((....))...)))).)))))))))))).)).))))))..)))))))))))))).)))))...
...)).)))..))))).)))))))).))..
.)))))))))))...)))))))
.)))))))).))))).)).))).))))))).)))))).)))).)))))
)))))))....)))))))).)))).))).))).))..)).))..).)))))))))))))....))).)))))).))))))))))......
SIMILARITIES
miRBase
bra-MIR1885
:
1e-68
PMRD
bra-miR1885
:
1e-68
microPC
no hits
UniProt
sp|O82500|Y4117_ARATH: 0.0000000000003
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record