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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST008658
species: Brassica oleracea
miRNA family: MIR160
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCTGGCTCCCTGTATGCCA

miRNA*
 GCGTATGAGGAGCCATGCATA

mismatches: 2
bulges: 0
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pre-miRNA
 TGCATATGTGTAGTTGTATAAGATGTGTATGCCTGGCTCCCTGTATGCCATCCTCTAAGCTCATCGACCATTGATGACCTCCGTGAATGGCGTATGAGGA
GCCATGCATATTTTCATATACATTTACATACGTTTT

dot-bracket secondary structure
......(((((((.((((((.((...((((((.(((((((.((((((((((..((..((.(((((((...))))))).))....)))))))))))).)))
)))).))))))..)).)))))).)))))))......


SIMILARITIES
miRBase bra-MIR160a: 6e-68

PMRD bra-miR160a: 6e-68

microPC miR160: 3e-39		UniProt no hits

RFAM mir-160: 4e-20		most similar mature miRNAs

Identical with: miR160 from microPC (MNEST046225)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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