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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST046344
species:
Brassica rapa
source:
microPC, original name:
miR159
Taxonomy by NCBI:
Brassica rapa
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTCTA
miRNA*
GGGCTCCTTATAGTTCAAAC
mismatches:
1
bulges:
0
View larger
pre-miRNA
TA
GGGCTCCTTATAGTTCAAAC
GAGAGTTTAGCAGGGTAAAGAAAAGCTGCTAAGCTATGAATCCCATAAGCCCTAATCCTTATATATAAAAAGGATTTG
GTTATATGGCTTACATATCTCAGGAGCTTTAACTTGCCCTTTAATTGCTTTTACTCTTCT
TTGGATTGAAGGGAGCTCTA
dot-bracket secondary structure
((
(((((((((.(((((((((.
((((((..((((((((((...((((((.((.((.((((.(..(((((((((..(((((((.........))))))).)
))).)))))..).)))).)).)).))))))...))))))......))))...)))))).)
)))))))).)))))))))))
SIMILARITIES
miRBase
bra-MIR159a
:
2e-99
PMRD
bra-miR159a
:
2e-99
microPC
miR159
:
2e-99
UniProt
no hits
RFAM
MIR159: 4e-64
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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