miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST003186
species: Arabidopsis thaliana
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTATCATCATCATCCTCGTAA

miRNA*
 AGGAGGTGGAGGTGGAGGAG

mismatches: 3
bulges: 1
View larger
pre-miRNA
 GATTCTCTTTCTCTCTATCTATCATCATCATCCTCGTAATCCTCTCCTTTCTCCTTCAGACCCCTCCTAGTTGCTGTTTAAACAAACAAAAAAAGACTGC
TTCTCTTTCTTATTTCTCTCATCATCATCATCAATGGTTTTATGAGATTTATATCAAAAAACATTGAGGAGCTAGAGAGAAAGAGAGAGTGTGTGTGTAG
AAAAAGATTGAAACATCATCAAGATTGATGGAGCAAGGAGGAGGTGGTGGTGGTAATGAAGTTGTGGAGGAAGCTTCACCTATTAGTTCAAGACCTCCTG
CTAACAACTTAGAAGAGCTTATGAGATTCTCAGCCGCCGCGGATGACGGTGGATTAGGAGGTGGAGGTGGAGGAGGAGGAGGNAGGAANT

dot-bracket secondary structure
..((((((((((((...(((.(((((.(((.((((.((((((...((.((.(((.....(((((((((..(((((((((................(((((
..(((((((((...((((((....((....((((((.((((.(((........))).)))))))))).))....)))))))))))))))...))).))..
..........)))).((((((....)))))))))))..)))))).)))((((((....((((((((((((...(((.............))).)))))..
...)))))))((((...((....)).))))..))))))..))).)).)).)))))).))))))).))))).))))))))))).))))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q9C882|GTL1_ARATH: 0.00000000003

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
degradome data
download this record




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