miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000231
species: Brassica napus
miRNA family: MIRf129
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCGGAGGGATTCCTTCTTTG

miRNA*
 CAGAGTCGATTCTTTCTGGATG

mismatches: 3
bulges: 1
View larger
pre-miRNA
 CCCTTAGCCTCAGAACAAGATGCAGAGTCGATTCTTTCTGGATGTTGTAGTCAGCCAAGGTACGACCATCTTCAAGCTGTTTTCCGGCGAATATCAACCT
CTGCTGATCCGGAGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGA

dot-bracket secondary structure
......(((..(((.((.((((.((((..((.((((((((((........(((((..((((..((...(.(((..((((.....))))))).))).))))
..))))))))))))))).)).)))).)))).))..))).))).....


SIMILARITIES
miRBase no hits

PMRD ath-miRf10060-akr: 5e-16

microPC no hits		UniProt sp|P0CH32|UBQ4_ARATH: 2e-20

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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