miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000266
species: Brassica napus
miRNA family: MIR319
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGACTGAAGGGAGCTCCCT

miRNA*
 GGAGCTTTCTTCGGTCCACTC

mismatches: 1
bulges: 0
View larger
pre-miRNA
 ATGCTGGGTTGGTGGGGGAAGGGAGCTTTCTTCGGTCCACTCATAGAATAATATGTGAGATTTAATTGACTCTCGACTCATTCATCCAAATACCAAATGA
AAGAATATGTAGACATATGGTAAATGAATGAATGATGCTAGAGACAAATTGAATCTTCACTTCTCTATGCTTGGACTGAAGGGAGCTCCCTTTTTTTATT
TTCCTGTAT

dot-bracket secondary structure
((((.(((..(((((((((((((((((((((((((((((..((((((.......(((((((((((((...((((...((((((((.((..(((((.(((.
.............))).)))))..)).)))))))).....))))..))))))))).))))...))))))..)))))))))))))))))))))))))))))
.))).))))


SIMILARITIES
miRBase aly-MIR319b: 6e-75

PMRD ath-miR319b: 4e-73

microPC miR319: 5e-94		UniProt no hits

RFAM MIR159: 3e-74		most similar mature miRNAs

Identical with: miR319 from microPC (MNEST046215)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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