ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR164
source: miRBase, original name: bna-MIR164 (MI0006478)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CACGTGCTCCACTCCTCCAAC mismatches: 3 bulges: 0 |
pre-miRNA
CCACGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAGATCTATCTCATGTAATTTGCACGTGCTCCACTCCTCCAACATG
dot-bracket secondary structure
....(((((((.((..(((((((((((((.......(((.((((....)))).)))..)))))))))))))..)).)))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
CCACGTTGGAGAAGCAGGGCACGTGCAAACCAACAAACACGAGATCTATCTCATGTAATTTGCACGTGCTCCACTCCTCCAACATG
dot-bracket secondary structure
....(((((((.((..(((((((((((((.......(((.((((....)))).)))..)))))))))))))..)).)))))))...
SIMILARITIES| miRBase bra-MIR164a: 1e-43 PMRD bra-miR164a: 1e-43 microPC miR164: 0.00002 | UniProt no hits RFAM MIR164: 0.00000000000008 |
Identical with: bra-MIR164a from miRBase (MNEST040313) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
