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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040283
species: Brassica napus
miRNA family: MIR169_1
source: miRBase, original name: bna-MIR169l (MI0006468)

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGCCAAGGATGACTTGCCTGC

miRNA*
 AGGCAGTCTCCTTGGCTATT

mismatches: 1
bulges: 2
View larger
pre-miRNA
 CATGGCGAAAAGAGTCGTGTTTAGTAGCCAAGGATGACTTGCCTGCTCTTGTTCACCTCCACGATTCAACTTTATACGTTGAAGGGTTTTGGATTATTGT
GCATTCAACATGTATAATAATTTGAAATCATGTTGAATCTTTGTGGGTTAGGTTTCAGGCAGTCTCCTTGGCTATTTTGACATACTTTTTTCATCCATG

dot-bracket secondary structure
(((((.(((((((((.(((((.((((((((((((.((((.(((((..((((...(((..((.((((((((.(((.....)))..(((((..(((((((((
((((.....)))))))))))))..)))))..))))))))..))..)))))))...)))))))))))))))))))))..))))))))))))))..)))))


SIMILARITIES
miRBase bna-MIR169j: 1e-91

PMRD bna-miR169l: 9e-111

microPC miR169: 0.00004		UniProt no hits

RFAM MIR169_5: 5e-51

Identical with: bna-miR169j from PMRD (MNEST048359)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"



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