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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST048380
species: Brassica napus
miRNA family: MIR2111
source: PMRD, original name: bna-miR2111a

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAATCTGCATCCTGAGGTTTA

miRNA*
 AGTCCTCGGGATGCGGATTACC

mismatches: 3
bulges: 0
View larger
pre-miRNA
 GATGACAAGTATTGGTGAGGACCGGGTAATCTGCATCCTGAGGTTTAAAGCTTGATTATACGCATAACATGCCGACGCATATAACTATGTGTTTTAGAAT
AGCTTTTAGTCCTCGGGATGCGGATTACCTCTTCCTTACTATACGTACACG

dot-bracket secondary structure
........((((.((((((((..((((((((((((((((((((...((((((.......(((((((..((((....)))).....)))))))........
))))))....))))))))))))))))))))..)))))))))))).......


SIMILARITIES
miRBase bra-MIR2111a: 3e-82

PMRD bna-miR2111a: 3e-82

microPC no hits		UniProt no hits

RFAM no hits

Identical with: bra-MIR2111a from miRBase (MNEST040327)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references
[1] Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR, Plant Physiol. 150:1541-1555(2009)., "Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing"



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