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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST008667
species: Brassica oleracea
miRNA family: miR162
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGAGGCAGCGGTTCATCGAT

miRNA*
 CGATAAACCTCTGCATCCAGC

mismatches: 4
bulges: 0
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pre-miRNA
 GTGAAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGTGGATTTTTTTTTTGGTTGTTTGTTGTTGTTGGAAAGAGATTAAAAGCATGAACGGATC
GATAAACCTCTGCATCCAGCGGTTGCCT

dot-bracket secondary structure
((((...)))).(((.((((.((((.((((((((.(((.(((.(((((((((((..................)))))))))))....))).))).)))))
))).)))).)))).))).((....))..


SIMILARITIES
miRBase cpa-MIR162a: 0.000000000000007

PMRD cpa-miR162a: 0.000000000000007

microPC miR162: 1e-25		UniProt no hits

RFAM MIR162_2: 0.0000000001		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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