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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST003187
species: Arabidopsis thaliana
miRNA family: MIRf16
source: miRNEST

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TACTCGACCACGGGGTCGAGT

miRNA*
 TCGACCACGTGGTTGAGTAGT

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TGAAGGTGATGAAGGTACTCGACCACGTGGTTGAGTAGTGTGATCGAGTGAAGGTGATGTGGTGGACGTGATGATACTCGACCAGGGGGTCGAGTAATGT
GATCGAGTGGTTGTCCAGGTGGTACTCGACCATGGGGTCGAGTGGTGACGTGAAGTGCTGAGGTCTTCTACTCGACCACGGGGTCGAGTGGTCTGTTGAT
GTCG

dot-bracket secondary structure
.((...((((((...(((((((((.(((((((((((((...((((.((((......((((..(((((.((((.((((((((((....)))))))))...)
.)))).......)))))...(.(((((((((....))))))))).).))))....))))..))))..))))))))))))).))))))))).)).))))..
.)).


SIMILARITIES
miRBase no hits

PMRD ath-miRf10735-akr: 3e-101

microPC no hits		UniProt no hits

RFAM MIR854: 0.00000005		most similar mature miRNAs

Identical with: ath-miRf10088-akr from PMRD (MNEST047188)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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