miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST003331
species: Arabidopsis thaliana
miRNA family: miR319b
source: miRNEST

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAGCTTTCTTCGGTCCACTC

miRNA*
 TTGGACTGAAGGGAGCTCCCT

mismatches: 3
bulges: 0
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pre-miRNA
 TGGTGGAGGAAGAGAGCTTTCTTCGGTCCACTCATGGAGTAATATGTGAGATTTAATTGACTCTCGACTCATTCATCCAAATACCAAATGAAAGAATTTG
TTCTCATATGGTAAATGAATGAATGATGCGAGGGACAAATTGAGTCTTCACTTCTCTATGCTTGGACTGAAGGGAGCTCCCTATTTTTATC

dot-bracket secondary structure
.((((((((.((.(((((((((((((((((..(((((((......(((((((((((((..((((((..((((((((.((..(((((.((((.((......
)).)))).)))))..)).))))))))..))))))...))))))))).))))..)))))))..))))))))))))))))).)).))))))))


SIMILARITIES
miRBase aly-MIR319b: 8e-96

PMRD ath-miR319b: 3e-92

microPC miR319: 1e-91		UniProt no hits

RFAM MIR159: 1e-101		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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